Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015837664.1_cds_XP_016506687.1_19890
CDS Infomation

[gene=LOC107824442] [db_xref=GeneID:107824442] [protein=probable polygalacturonase isoform X2] [protein_id=XP_016506687.1] [location=complement(join(36144..36850,37124..37194,37287..37461,37578..37698,38338..38688,39054..39068))] [gbkey=CDS]
Sequence

ATGAAAAAACTCCTGATGGAAAAGACAAGTTGGTTGCTACTGGTGATATTAGTGTTGGTG
CTTTTAGTAGGAGCAGAGGGAAGAAAATCAAGAATTCTTGATGAGTCTTCTTCTTATGAT
TTAGAGTACAAAGCAATAAGTTGTAGAGCACACAGTGCATCAATAACAGATTTTGGAGGA
GTTGGTGATGGAAAAACACTTAACACTAAAGCATTTCAAGAAGCAGTGAATCAGTTGAGT
CAGTATGCATCAGATGGTGGATCACAACTTATAGTACCTGCTGGTCAATGGCTCACTGGT
AGCTTTAATCTTACTAGCCATTTCACTCTCTTCCTTCAAAAAGATGCTGTTCTTCTTGCT
TCTCAGGAAATAAATGAGTGGGCTGTTATAGACCCATTACCATCATATGGTCATGGTAGG
GATGCAGCAGGTGGAAGGTACATCAGTCTTTTATTTGGCACTAACCTTACTGATGTTATC
ATCACAGGTGAGAATGGAACAATAGATGGGCAGGGTGAACTTTGGTGGCAGAAATTTCAC
AGCAAAAAGCTAAAATACACAAGACCTTACTTGATTGAACTTATGCATTCTGATAATATT
CAGATATCAGATCTAACCCTTGTCAACTCTCCATCTTGGAATATCCATCCTGTTTATAGC
AGCAATATCATTATCCAAGGCATCACTATTTTAGCTCCAGTAAAATCTCCAAACACTGAT
GGAATCAATCCAGATTCTTGCACAAATGTAAGACTTGAAGATAATTACATTGTATCTGGA
GATGATTGTGTTGCAGTTAAAAGTGGTTGGGATGAATATGGTATAAAATACGGAATGCCA
ACAAGTCAATTAGTCATCAGGCGCCTGACTTGCATTTCGCCTTATAGTGCTGCAATAGCA
TTAGGAAGTGAAATGTCAGGTGGGATTCAAGATGTGAGAGCCGAGGACATCACGGCCATC
AACACAGAATCAGGGGTGAGGATCAAGACTGCTGTTGGCCGAGGCGGTTTTGTCAAAGAT
GTATATGTCAAAGGGATGACACTGCACACAATGAAATGGGTATTTTGGATGACTGGCAAT
TATGGATCACATGCTGACACTCATTGGGATCCTAATGCATTGCCTGAGATAAAAGGGATT
AATTACCGCGATGTGGTGGCTGAGAACGTGTCAATGGCTGCTCGGCTAGAGGGGATTTCT
GGGGATCCGTTTACCGGAATCTGCATGTCGAATGTGACAATAAGTATGGCAAAGAAGGCC
AAGAAATATCCATGGACTTGCACTGATATTGAAGGAATTACCAGTGGTGTGCAGCCTCCA
CCTTGTCAGTTGTTGCCTGATCAGGGCCCAGAAAAGAGTGAAATGTGTGATTTTCCTACA
GAGAGTTTACCTATTGATAACATAGAGATGCAAAGATGTTCCTATAGATTGAATTACTAA

Peptide Sequence

PEP ID

XP_016506687.1
PEP Infomation

PREDICTED: probable polygalacturonase isoform X2 [Nicotiana tabacum]
Sequence

MKKLLMEKTSWLLLVILVLVLLVGAEGRKSRILDESSSYDLEYKAISCRAHSASITDFGG
VGDGKTLNTKAFQEAVNQLSQYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLQKDAVLLA
SQEINEWAVIDPLPSYGHGRDAAGGRYISLLFGTNLTDVIITGENGTIDGQGELWWQKFH
SKKLKYTRPYLIELMHSDNIQISDLTLVNSPSWNIHPVYSSNIIIQGITILAPVKSPNTD
GINPDSCTNVRLEDNYIVSGDDCVAVKSGWDEYGIKYGMPTSQLVIRRLTCISPYSAAIA
LGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGFVKDVYVKGMTLHTMKWVFWMTGN
YGSHADTHWDPNALPEIKGINYRDVVAENVSMAARLEGISGDPFTGICMSNVTISMAKKA
KKYPWTCTDIEGITSGVQPPPCQLLPDQGPEKSEMCDFPTESLPIDNIEMQRCSYRLNY

Transcript Sequence

Gene sequence data has not been registered.